Phylogenetic Analysis
Estimating synonymous and nonsynonymous substitutions

Phylogenetic Analysis

• GCG Programs
• Diverge: Estimate synonymous and nonsynonymous substitutions between aligned coding regions
• Distances: Create a distance matrix from aligned sequences
• GrowTree: Create a phylogenetic tree from a distance matrix created by Distances or Diverge
• Other Programs
• PHYLIP: Entry point for the PHYLogeny Inference Package (Felsenstein)
• fastDNAml (version 1.2): Construct phylogenetic trees from DNA sequences using maximum likelihood. A fast implementation of the PHYLIP package DNAML program (Olsen, Matsuda, Hagstrom, Overbeek).

Related Tools

• GCG Programs
• Pileup: Align a set of nucleic acid or protein sequences
• Other Programs
• ClustalW: Align a set of nucleic acid or protein sequences

This website will look much better in a browser that supports web standards, but it has been designed so that it is still usable and accessible to any browser or web-enabled device.