Software Tools :: Mapping and Digests
Background
Mapping
and Digests
Programs
Restriction enzymes
- GCG Programs
- Map: Finds restriction enzyme cut sites
- MapPlot: Displays restriction sites graphically
- MapSort: Displays fragments from a single or double digest of a nucleic acid sequence
- EMBOSS Programs
- restrict: Finds restriction enzyme cleavage sites
- remap: Displays a sequence with restriction cut sites, translation etc
- restover: Finds restriction enzymes that produce a specific overhang
- silent: Silent mutation restriction enzyme scan
- recoder: Removes restriction sites but maintains the same translation
Proteolytic enzymes
- GCG Programs
- PeptideMap: Finds proteolytic enzyme cut sites
- PeptideSort: Displays peptide fragments from a digest of a protein sequence
- EMBOSS Programs
- digest: Protein proteolytic enzyme or reagent cleavage digest
Isoelectric points and charge plots
- GCG Programs
- Isoelectric: Plots the charge as a function of pH for a peptide sequence
- EMBOSS Programs
- charge: Protein charge plot
- iep: Calculates the isoelectric point of a protein
Related Tools
- EMBOSS Programs
- redata: Search REBASE for enzyme name, references, suppliers etc
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