Software Tools :: Format Conversions
Background
Bioinformatics Formats
Programs
Sequence format conversion only
- GCG Programs
- FromGenBank, FromFastA, FromEMBL, FromPIR, FromStaden, FromIG: Converts sequence(s) to individual GCG sequence files
- ToFastA, ToPIR, ToStaden, ToIG: Converts GCG sequences to other sequence formats
- FromTrace: Converts ABI or SCF trace files to GCG sequence files
Sequence database format conversion only
- GCG Programs
- GCGToBLAST: Converts a collection of GCG sequences into a BLAST database
Sequence conversions plus...
- GCG Programs
- Reformat: Converts miscellaneous sequence files into GCG sequence files
- EMBOSS Programs
- seqret: Reads and writes (returns) sequences
- seqretset: Reads and writes (returns) a set of sequences all at once
- abiview: Converts ABI trace files into FASTA sequence files
- readseq: Converts sequence files from one format to another, plus...
- reverses sequences
- removes gaps
- writes "pretty" sequence output
- ClustalW conversion function: Multiple sequence file format conversions (including GDE format)
Tools for Converting other Types of Files and Databases
- GCG Programs
- Reformat: Converts scoring matrix or enzyme data files into GCG-readable files
- HmmerConvert: Converts HMM profiles between binary and text representations, or into Gribskov profile files
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