Software Tools :: DNA Sequence Assembly
Background
Sequence Assembly
Programs
Sequence Assembly
- GCG Programs
- GelStart: Initializes an assembly session by creating a new assembly project or identifying an existing project
- GelEnter: Adds fragment sequences to a project
- GelMerge: Assembles fragment sequences into contigs
- GelAssemble: Displays and edits contigs assembled by GelMerge
- GelView: Displays the structure of contigs in an assembly project
- GelDisassemble: Breaks up project contigs into the constituent fragments
Related Tools
- GCG Programs
- FromTrace: Converts ABI or SCF trace files into individual GCG sequence files
- Assemble: Concatenates sequence fragments into a single sequence
- Reverse: Reverse and/or complement a sequence
- EMBOSS Programs
- abiview: Reads ABI file and displays the trace
- vectorstrip: Strips out DNA between a pair of vector sequences
- merger: Merges two overlapping nucleic acid sequences
- megamerger: Merges two large overlapping nucleic acid sequences
- revseq: Reverses and complements a sequence
- trimseq: Trims ambiguous bits off the ends of sequences
- cutseq: Removes a specified section from a sequence
- extractseq: Extracts regions from a sequence
- newseq: Creates a short new sequence from keyboard entry
- pasteseq: Inserts one sequence into another
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