Software Tools :: Sequence Alignments References

  • D. Davison (1985), "Sequence similarity ('homology') searching for molecular biologists." Bull. Math. Biol. 47, 437-474. Old, but a good overall introduction.
  • S.F. Altschul, "Sequence comparison and alignment." Ch 7 in DNA and Protein Sequence Analysis. A Practical Approach, M.J. Bishop and C.J. Rawlings (eds) (1997), Oxford University Press. A more up-to-date introduction.
  • L. Duret and S. Abdeddaim, "Multiple alignments for structural, functional, or phylogenetic analyses of homologous sequences." Ch. 3 in Bioinformatics: Sequence, structure, and databanks, D. Higgins and W. Taylor (eds) (2000), Oxford University Press.

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