Some explanations about the options
Main parameters
- ORFs list file (as produced by glimmer-extract)
- Format should be one string per line. Each line has an ID string followed by white space followed by the sequence itself. Use the 'glimmer_extract' program to generate this file.
- enter either the name of a file or the actual data
- if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
- OR you can type your data in the next area, or cut and paste it from another application.
- (but not both)
-
References:
A.L. Delcher, D. Harmon, S. Kasif, O. White, and S.L. Salzberg. Improved microbial gene identification with GLIMMER. Nucleic Acids Research, 27:23, 4636-4641.
S. Salzberg, A. Delcher, S. Kasif, and O. White. Microbial gene identification using interpolated Markov models. Nucleic Acids Research 26:2 (1998), 544-548.
Pise form generator version: 5.a (19 Oct 2006 12:35)