Glimmer : build-icm - build a model (S. Salzberg)



your e-mail

( = required, = conditionally required)



ORFs list file (as produced by glimmer-extract) : please enter either :
  1. the name of a file:
  2. or the actual data here:



Print model in text format (-t) instead of binary format (-b)


your e-mail


Some explanations about the options



Main parameters
ORFs list file (as produced by glimmer-extract)
Format should be one string per line. Each line has an ID string followed by white space followed by the sequence itself. Use the 'glimmer_extract' program to generate this file.
enter either the name of a file or the actual data
if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
OR you can type your data in the next area, or cut and paste it from another application.
(but not both)



References:

A.L. Delcher, D. Harmon, S. Kasif, O. White, and S.L. Salzberg. Improved microbial gene identification with GLIMMER. Nucleic Acids Research, 27:23, 4636-4641.

S. Salzberg, A. Delcher, S. Kasif, and O. White. Microbial gene identification using interpolated Markov models. Nucleic Acids Research 26:2 (1998), 544-548.

Pise form generator version: 5.a (19 Oct 2006 12:35)